PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_11697A
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family MYB_related
Protein Properties Length: 89aa    MW: 9828.88 Da    PI: 8.2092
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_11697AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.41.4e-071761344
                               SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
            Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                                W++ E +l+ ++ + +G +   +W++++r mg  +t+++++  +
  Oropetium_20150105_11697A 17 EWSKKENKLFEQVLACYGEDtpdRWHKVSRAMGGIKTAEEVRRQY 61
                               7********************************6689*9999876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512939.0621369IPR017884SANT domain
SMARTSM007171.2E-51467IPR001005SANT/Myb domain
SuperFamilySSF466891.57E-101669IPR009057Homeodomain-like
CDDcd001671.53E-51761No hitNo description
PfamPF002497.1E-61761IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 89 aa     Download sequence    Send to blast
MSSGSRSSSC SGNAGSEWSK KENKLFEQVL ACYGEDTPDR WHKVSRAMGG IKTAEEVRRQ  60
YEILQEDVGN IVSGRVPFPK YNTQGAWN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A4e-241485777RADIALIS
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002458271.12e-42hypothetical protein SORBIDRAFT_03g030330
SwissprotQ6NNN01e-27RADL3_ARATH; Protein RADIALIS-like 3
TrEMBLC5XFX62e-42C5XFX6_SORBI; Putative uncharacterized protein Sb03g030330
STRINGSb03g030330.16e-42(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP106733121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.28e-25RAD-like 6